Single EV Imaging Data Analysis and Visualization Pipeline
Cygnus’s analytics module offers a customizable and interactive workflow for single EV analysis with multiplexing. It is designed to accommodate multiple input file types (e.g. xls, csv, fcs, sql) to ensure compatibility with a wide range of data sources and experimental modalities. Vignette for Cygnus analysis workflow can be found here.
Quick Installation of Cygnus
First, install devtools (for installing GitHub packages) if it isn’t already installed:
if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")Then, install BiocManager (for installing bioconductor packages) if it isn’t already installed:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")Then, install Cygnus:
devtools::install_github("yeinchung/Cygnus", ref="master", repos = BiocManager::repositories())Issues using Cygnus?
Cygnus is currently in beta. If you think you have found a bug, please first install the latest version of Cygnus via
devtools::install_github("yeinchung/Cygnus", ref="master", repos = BiocManager::repositories())If this does not fix your problem, please report an issue on Github.